Andrew Charlwood
51 lines
1.4 KiB
Python
51 lines
1.4 KiB
Python
"""
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Analysis package for patient pathway processing.
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This package contains refactored functions from the original generate_graph() pipeline:
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- pathway_analyzer: Main analysis pipeline with prepare_data, calculate_statistics, build_hierarchy
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- statistics: Statistical calculation functions (costs, frequencies, durations)
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"""
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from analysis.pathway_analyzer import (
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prepare_data,
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calculate_statistics,
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build_hierarchy,
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prepare_chart_data,
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generate_icicle_chart,
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)
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from analysis.statistics import (
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count_consecutive_values,
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calculate_drug_costs,
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calculate_dosing_frequency,
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calculate_drug_frequency_row,
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calculate_cost_per_patient_per_annum,
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calculate_treatment_duration,
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calculate_pathway_proportion,
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aggregate_patient_costs,
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aggregate_drug_frequencies,
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format_treatment_statistics,
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remove_nan_values,
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)
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__all__ = [
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# Pathway analysis pipeline
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"prepare_data",
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"calculate_statistics",
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"build_hierarchy",
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"prepare_chart_data",
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"generate_icicle_chart",
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# Statistical calculations
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"count_consecutive_values",
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"calculate_drug_costs",
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"calculate_dosing_frequency",
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"calculate_drug_frequency_row",
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"calculate_cost_per_patient_per_annum",
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"calculate_treatment_duration",
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"calculate_pathway_proportion",
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"aggregate_patient_costs",
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"aggregate_drug_frequencies",
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"format_treatment_statistics",
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"remove_nan_values",
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]
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