Andrew Charlwood 8952156798 feat: integrate batch GP diagnosis lookup for indication charts (Task 3.2) ...

- Add batch_lookup_indication_groups() to diagnosis_lookup.py
  - Efficient batch Snowflake queries (500 patients per batch)
  - Returns UPID → Indication_Group mapping
  - Source tracking: DIAGNOSIS vs FALLBACK
- Update cli/refresh_pathways.py indication processing
  - Call batch_lookup_indication_groups() before chart generation
  - Build indication_df for process_indication_pathway_for_date_filter()
  - Log diagnosis coverage statistics
- Enables full --chart-type all functionality

2026-02-05 14:45:06 +00:00

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