Andrew Charlwood
70 lines
1.5 KiB
TOML
70 lines
1.5 KiB
TOML
[tool.setuptools]
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py-modules = []
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packages = []
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[project]
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name = "patient-pathway-analysis"
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version = "0.1.0"
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description = "Add your description here"
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readme = "README.md"
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requires-python = ">=3.10"
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dependencies = [
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"darkdetect==0.8.0",
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"decorator==5.1.1",
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"et-xmlfile==1.1.0",
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"executing==1.2.0",
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"fastparquet>=2024.11.0",
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"idna==3.4",
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"itsdangerous==2.1.2",
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"jedi==0.18.2",
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"jinja2==3.1.2",
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"jupyter-core==5.3.1",
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"numpy==1.25.0",
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"packaging==23.1",
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"pandas==2.0.3",
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"pillow==10.0.0",
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"plotly==5.15.0",
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"pyarrow>=20.0.0",
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"python-dateutil==2.8.2",
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"reflex>=0.6.0",
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"tenacity==8.2.2",
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]
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[project.optional-dependencies]
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test = [
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"pytest>=8.0.0",
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"pytest-cov>=4.0.0",
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]
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[tool.pytest.ini_options]
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testpaths = ["tests"]
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python_files = ["test_*.py"]
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python_classes = ["Test*"]
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python_functions = ["test_*"]
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addopts = [
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"-v",
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"--tb=short",
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"--strict-markers",
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]
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markers = [
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"slow: marks tests as slow (deselect with '-m \"not slow\"')",
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"integration: marks tests as integration tests (require external resources)",
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"largedata: marks tests that require large datasets (deselect with '-m \"not largedata\"')",
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]
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[tool.coverage.run]
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source = ["core", "data_processing", "analysis", "visualization", "tools"]
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branch = true
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omit = [
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"*/tests/*",
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"*/__pycache__/*",
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]
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[tool.coverage.report]
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exclude_lines = [
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"pragma: no cover",
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"def __repr__",
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"raise NotImplementedError",
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"if TYPE_CHECKING:",
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]
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show_missing = true
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