Andrew Charlwood b0a8a9de1c feat: merge asthma Search_Term variants in CLUSTER_MAPPING_SQL and drug mapping (Task 1.2) ...

Merge 'allergic asthma' and 'severe persistent allergic asthma' into
canonical 'asthma' in both CLUSTER_MAPPING_SQL (Snowflake CTE) and
load_drug_indication_mapping() (DimSearchTerm.csv loader).

- CLUSTER_MAPPING_SQL: 3 Cluster_IDs (AST_COD, eFI2_Asthma, SEVAST_COD) now
  all map to Search_Term = 'asthma'
- Added SEARCH_TERM_MERGE_MAP constant for reusable normalization
- load_drug_indication_mapping() applies merge at CSV load time
- urticaria (XSAL_COD) stays separate — not merged with asthma
- Combined asthma drug list: BENRALIZUMAB, DUPILUMAB, INHALED, MEPOLIZUMAB,
  OMALIZUMAB, RESLIZUMAB

2026-02-05 22:56:29 +00:00

..

__init__.py

Initial commit before Ralph loop

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cache.py

Initial commit before Ralph loop

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data_source.py

Initial commit before Ralph loop

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database.py

Initial commit before Ralph loop

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diagnosis_lookup.py

feat: merge asthma Search_Term variants in CLUSTER_MAPPING_SQL and drug mapping (Task 1.2)

2026-02-05 22:56:29 +00:00

load_snomed_mapping.py

fix: correct patient identifier for GP diagnosis lookup (Task 3.3)

2026-02-05 15:49:24 +00:00

loader.py

Initial commit before Ralph loop

2026-02-04 13:04:29 +00:00

migrate.py

feat: add chart_type column to pathway_nodes schema (Task 2.2)

2026-02-05 14:24:57 +00:00

pathway_pipeline.py

feat: add indication pathway processing functions (Task 2.3)

2026-02-05 14:32:28 +00:00

patient_data.py

Initial commit before Ralph loop

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reference_data.py

Initial commit before Ralph loop

2026-02-04 13:04:29 +00:00

schema.py

feat: add chart_type column to pathway_nodes schema (Task 2.2)

2026-02-05 14:24:57 +00:00

snowflake_connector.py

Initial commit before Ralph loop

2026-02-04 13:04:29 +00:00