Initial commit before Ralph loop

2026-02-04 13:04:29 +00:00
commit fdd33a67af
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+"""
+Analysis package for patient pathway processing.
+
+This package contains refactored functions from the original generate_graph() pipeline:
+- pathway_analyzer: Main analysis pipeline with prepare_data, calculate_statistics, build_hierarchy
+- statistics: Statistical calculation functions (costs, frequencies, durations)
+"""
+
+from analysis.pathway_analyzer import (
+    prepare_data,
+    calculate_statistics,
+    build_hierarchy,
+    prepare_chart_data,
+    generate_icicle_chart,
+)
+
+from analysis.statistics import (
+    count_consecutive_values,
+    calculate_drug_costs,
+    calculate_dosing_frequency,
+    calculate_drug_frequency_row,
+    calculate_cost_per_patient_per_annum,
+    calculate_treatment_duration,
+    calculate_pathway_proportion,
+    aggregate_patient_costs,
+    aggregate_drug_frequencies,
+    format_treatment_statistics,
+    remove_nan_values,
+)
+
+__all__ = [
+    # Pathway analysis pipeline
+    "prepare_data",
+    "calculate_statistics",
+    "build_hierarchy",
+    "prepare_chart_data",
+    "generate_icicle_chart",
+    # Statistical calculations
+    "count_consecutive_values",
+    "calculate_drug_costs",
+    "calculate_dosing_frequency",
+    "calculate_drug_frequency_row",
+    "calculate_cost_per_patient_per_annum",
+    "calculate_treatment_duration",
+    "calculate_pathway_proportion",
+    "aggregate_patient_costs",
+    "aggregate_drug_frequencies",
+    "format_treatment_statistics",
+    "remove_nan_values",
+]