Restructured src to more logical heirachy

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A Charlwood

2026-02-09 16:22:05 +00:00

parent 7e63e6ea45

commit fcbde7c689

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src/analysis/CLAUDE.md → analysis/CLAUDE.md

src/analysis/__init__.py → analysis/__init__.py

src/analysis/pathway_analyzer.py → analysis/pathway_analyzer.py

src/analysis/statistics.py → analysis/statistics.py

src/cli/CLAUDE.md → cli/CLAUDE.md

src/cli/__init__.py → cli/__init__.py

src/cli/compute_trends.py → cli/compute_trends.py

src/cli/refresh_pathways.py → cli/refresh_pathways.py

src/config/CLAUDE.md → config/CLAUDE.md

src/config/__init__.py → config/__init__.py

src/config/snowflake.toml → config/snowflake.toml

src/core/CLAUDE.md → core/CLAUDE.md

src/core/__init__.py → core/__init__.py

src/core/config.py → core/config.py

src/core/logging_config.py → core/logging_config.py

src/core/models.py → core/models.py

src/core/resource_path.py → core/resource_path.py

src/data_processing/CLAUDE.md → data_processing/CLAUDE.md

src/data_processing/__init__.py → data_processing/__init__.py

src/data_processing/cache.py → data_processing/cache.py

src/data_processing/data_source.py → data_processing/data_source.py

src/data_processing/database.py → data_processing/database.py

src/data_processing/diagnosis_lookup.py → data_processing/diagnosis_lookup.py

src/data_processing/loader.py → data_processing/loader.py

src/data_processing/migrate.py → data_processing/migrate.py

src/data_processing/parsing.py → data_processing/parsing.py

src/data_processing/pathway_pipeline.py → data_processing/pathway_pipeline.py

src/data_processing/pathway_queries.py → data_processing/pathway_queries.py

src/data_processing/reference_data.py → data_processing/reference_data.py

src/data_processing/schema.py → data_processing/schema.py

src/data_processing/snowflake_connector.py → data_processing/snowflake_connector.py

src/data_processing/transforms.py → data_processing/transforms.py

src/visualization/CLAUDE.md → visualization/CLAUDE.md

src/visualization/__init__.py → visualization/__init__.py

src/visualization/plotly_generator.py → visualization/plotly_generator.py