chore: archive unused files and move legacy code to can_delete
archive/ — unused reference files (no active code references): - LookupSearchTermCleanedDrugName.csv, condition_directorate_mapping.csv - na_directory_rows.csv (diagnostic output), ta-recommendations.xlsx - snomed_indication_mapping_query.sql (source for embedded SQL) - IMPROVEMENT_RECOMMENDATIONS.md, power query.pq archive/can_delete/ — legacy code and logs safe to remove: - dashboard_gui.py (replaced by Reflex app) - pathways_app_old.py.bak (old backup) - Ralph loop iteration logs (iterations 2-8)
This commit is contained in:
Andrew Charlwood
@@ -0,0 +1,165 @@
|
||||
,Search_Term,CleanedDrugName
|
||||
0,acute coronary syndrome,ABCIXIMAB|CLOPIDOGREL|PRASUGREL|RIVAROXABAN|TICAGRELOR
|
||||
1,acute lymphoblastic leukaemia,BLINATUMOMAB|DASATINIB|INOTUZUMAB|PEGASPARGASE|PONATINIB|TISAGENLECLEUCEL
|
||||
2,acute myeloid leukaemia,AZACITIDINE|DECITABINE|GEMTUZUMAB|GILTERITINIB|GLASDEGIB|LIPOSOMAL|MIDOSTAURIN|ORAL|VENETOCLAX
|
||||
3,acute promyelocytic leukaemia,ARSENIC|GEMTUZUMAB
|
||||
4,allergic asthma,OMALIZUMAB
|
||||
5,allergic rhinitis,SQ
|
||||
6,alzheimer's disease,DONEPEZIL
|
||||
7,amyloidosis,VUTRISIRAN
|
||||
8,anaemia,ERYTHROPOIESIS-STIMULATING|ERYTHROPOIETIN
|
||||
9,anaplastic large cell lymphoma,BRENTUXIMAB
|
||||
10,ankylosing spondylitis,ADALIMUMAB|GOLIMUMAB|SECUKINUMAB|UPADACITINIB
|
||||
11,apixaban,ANDEXANET
|
||||
12,aplastic anaemia,ELTROMBOPAG
|
||||
13,arthritis,ETANERCEPT
|
||||
14,asthma,BENRALIZUMAB|DUPILUMAB|INHALED|MEPOLIZUMAB|OMALIZUMAB|RESLIZUMAB
|
||||
15,atopic dermatitis,ABROCITINIB|ALCLOMETASONE|BARICITINIB|CRISABOROLE|DUPILUMAB|PIMECROLIMUS
|
||||
16,atrial fibrillation,APIXABAN|DABIGATRAN|DRONEDARONE|EDOXABAN|RIVAROXABAN|VERNAKALANT
|
||||
17,attention deficit hyperactivity disorder,ATOMOXETINE
|
||||
18,attention-deficit hyperactivity disorder,METHYLPHENIDATE
|
||||
19,axial spondyloarthritis,ADALIMUMAB|GOLIMUMAB|IXEKIZUMAB|SECUKINUMAB|UPADACITINIB
|
||||
20,basal cell carcinoma,VISMODEGIB
|
||||
21,bipolar disorder,LOXAPINE|OLANZAPINE
|
||||
22,bladder,MIRABEGRON
|
||||
23,brca,OLAPARIB
|
||||
24,breast cancer,ABEMACICLIB|ALPELISIB|ANASTROZOLE|ATEZOLIZUMAB|BEVACIZUMAB|CAPECITABINE|DENOSUMAB|DOCETAXEL|ERIBULIN|EVEROLIMUS|FULVESTRANT|GEMCITABINE|INTRABEAM|LAPATINIB|NERATINIB|OLAPARIB|PACLITAXEL|PALBOCICLI|PALBOCICLIB|PEMBROLIZUMAB|PERTUZUMAB|RIBOCICLIB|SACITUZUMAB|TRASTUZUMAB|TUCATINIB|VINORELBINE
|
||||
25,cardiomyopathy,TAFAMIDIS
|
||||
26,cardiovascular disease,ATORVASTATIN
|
||||
27,cervical cancer,TOPOTECAN
|
||||
28,cholangiocarcinoma,PEMIGATINIB
|
||||
29,choroidal neovascularisation,AFLIBERCEPT|RANIBIZUMAB
|
||||
30,chronic kidney disease,DAPAGLIFLOZIN|IMLIFIDASE|ROXADUSTAT
|
||||
31,chronic liver disease,AVATROMBOPAG|LUSUTROMBOPAG
|
||||
32,chronic lymphocytic leukaemia,ACALABRUTINIB|BENDAMUSTINE|DUVELISIB|IBRUTINIB|IDELALISIB|OBINUTUZUMAB|OFATUMUMAB|RITUXIMAB|VENETOCLAX
|
||||
33,chronic myeloid leukaemia,ASCIMINIB|BOSUTINIB|STANDARD-DOSE|DASATINIB|DASITINIB|NILOTINIB|PONATINIB
|
||||
34,chronic obstructive pulmonary disease,ROFLUMILAST
|
||||
35,colon cancer,CAPECITABINE
|
||||
36,colorectal cancer,BEVACIZUMAB|CAPECITABINE|IRINOTECAN
|
||||
37,constipation,LUBIPROSTONE|METHYLNALTREXONE|NALDEMEDINE|NALOXEGOL|PRUCALOPRIDE
|
||||
38,covid-19,NIRMATRELVIR
|
||||
39,crohn's disease,INFLIXIMAB|VEDOLIZUMAB
|
||||
40,cutaneous t-cell lymphoma,BRENTUXIMAB|CHLORMETHINE
|
||||
41,cystic fibrosis,COLISTIMETHATE|LUMACAFTOR|MANNITOL
|
||||
42,cytomegalovirus,LETERMOVIR|MARIBAVIR
|
||||
43,deep vein thrombosis,APIXABAN|DABIGATRAN|EDOXABAN|RIVAROXABAN
|
||||
44,depression,ESKETAMINE
|
||||
45,diabetes,ERTUGLIFLOZIN|INHALED|AFLIBERCEPT|BROLUCIZUMAB|DEXAMETHASONE|FARICIMAB|FLUOCINOLONE|RANIBIZUMAB
|
||||
46,diabetic retinopathy,RANIBUZIMAB
|
||||
47,diffuse large b-cell lymphoma,AXICABTAGENE|POLATUZUMAB|TISAGENLECLEUCEL
|
||||
48,dravet syndrome,CANNABIDIOL|FENFLURAMINE
|
||||
49,drug misuse,BUPRENORPHINE|NALTREXONE
|
||||
50,dry eye,CICLOSPORIN
|
||||
51,dyspepsia,LANSOPRAZOLE
|
||||
52,endometrial cancer,DOSTARLIMAB
|
||||
53,epilepsy,CENOBAMATE|GABAPENTIN|RETIGABINE
|
||||
54,fallopian tube,BEVACIZUMAB|NIRAPARIB|OLAPARIB|RUCAPARIB
|
||||
55,follicular lymphoma,DUVELISIB|IDELALISIB|LENALIDOMIDE|OBINUTUZUMAB|RITUXIMAB|TISAGENLECLEUCEL
|
||||
56,gastric cancer,CAPECITABINE|RAMUCIRUMAB|TRASTUZUMAB|TRIFLURIDINE
|
||||
57,gastro-oesophageal junction,NIVOLUMAB|PEMBROLIZUMAB
|
||||
58,giant cell arteritis,TOCILIZUMAB
|
||||
59,glioma,CARMUSTINE
|
||||
60,gout,CANAKINUMAB|FEBUXOSTAT|LESINURAD
|
||||
61,graft versus host disease,RUXOLITINIB
|
||||
62,granulomatosis with polyangiitis,AVACOPAN|MEPOLIZUMAB
|
||||
63,growth hormone deficiency,SOMATROPIN
|
||||
64,hand eczema,ALITRETINOIN
|
||||
65,heart failure,DAPAGLIFLOZIN|EMPAGLIFLOZIN|IVABRADINE|SACUBITRIL|VERICIGUAT
|
||||
66,hepatitis b,ADEFOVIR
|
||||
67,hepatitis c,BOCEPREVIR|DACLATASVIR|ELBASVIR|GLECAPREVIR|INTERFERON|LEDIPASVIR|OMBITASVIR|PEGINTERFERON|PEGYLATED|SIMEPREVIR|SOFOSBUVIR|TELAPREVIR
|
||||
68,hepatocellular carcinoma,ATEZOLIZUMAB|CABOZANTINIB|LENVATINIB|RAMUCIRUMAB|REGORAFENIB|SELECTIVE|SORAFENIB
|
||||
69,hiv,CABOTEGRAVIR
|
||||
70,hodgkin lymphoma,BRENTUXIMAB|NIVOLUMAB|PEMBROLIZUMAB
|
||||
71,hormone receptor,ABEMACICLIB
|
||||
72,hypercholesterolaemia,EZETIMIBE
|
||||
73,hyperparathyroidism,CINACALCET|ETELCALCETIDE
|
||||
74,immune thrombocytopenia,AVATROMBOPAG|FOSTAMATINIB
|
||||
75,influenza,AMANTADINE|ZANAMIVIR|BALOXAVIR
|
||||
76,insomnia,ZALEPLON
|
||||
77,irritable bowel syndrome,ELUXADOLINE
|
||||
78,ischaemic stroke,ALTEPLASE
|
||||
79,juvenile idiopathic arthritis,ABATECEPT|CANAKINUMAB|TOCILIZUMAB|TOFACITINIB
|
||||
80,kidney transplant,BASILIXIMAB
|
||||
81,leukaemia,FLUDARABINE|IMATINIB
|
||||
82,lung cancer,ATEZOLIZUMAB|DURVALUMAB|GEFITINIB|ORAL|NINTEDANIB
|
||||
83,lymphoma,BENDAMUSTINE|CRIZOTINIB|PIXANTRONE|RITUXIMAB
|
||||
84,macular degeneration,AFLIBERCEPT|BROLUCIZUMAB|FARICIMAB|RANIBIZUMAB
|
||||
85,macular oedema,AFLIBERCEPT|RANIBIZUMAB
|
||||
86,major depressive episodes,AGOMELATINE|VORTIOXETINE
|
||||
87,malignant melanoma,VEMURAFENIB
|
||||
88,malignant pleural mesothelioma,NIVOLUMAB|PEMETREXED
|
||||
89,manic episode,ARIPIPRAZOLE
|
||||
90,mantle cell lymphoma,AUTOLOGOUS|BORTEZOMIB|IBRUTINIB|LENALIDOMIDE|TEMSIROLIMUS
|
||||
91,melanoma,COBIMETINIB|DABRAFENIB|ENCORAFENIB|IPILIMUMAB|NIVOLUMAB|PEMBROLIZUMAB|TALIMOGENE|TRAMETINIB
|
||||
92,merkel cell carcinoma,AVELUMAB
|
||||
93,migraine,BOTULINUM|EPTINEZUMAB|ERENUMAB|FREMANEZUMAB|GALCANEZUMAB
|
||||
94,motor neurone disease,RILUZOLE
|
||||
95,multiple myeloma,BORTEZOMIB|THALIDOMIDE|CARFILZOMIB|DARATUMUMAB|DENOSUMAB|ELOTUZUMAB|ISATUXIMAB|IXAZOMIB|LENALIDOMIDE|PANOBINOSTAT|POMALIDOMIDE|SELINEXOR|TECLISTAMAB
|
||||
96,multiple sclerosis,ALEMTUZUMAB|BETA|CLADRIBINE|DACLIZUMAB|DIMETHYL|DIROXIMEL|FINGOLIMOD|INTERFERON|NATALIZUMAB|OCRELIZUMAB|OZANIMOD|PEGINTERFERON|PONESIMOD|SIPONIMOD|TERIFLUNOMIDE
|
||||
97,myelodysplastic,LENALIDOMIDE|LUSPATERCEPT
|
||||
98,myelofibrosis,FEDRATINIB|RUXOLITINIB
|
||||
99,myocardial infarction,ALTEPLASE|BIVALIRUDIN|TICAGRELOR
|
||||
100,myotonia,MEXILETINE
|
||||
101,narcolepsy,SOLRIAMFETOL
|
||||
102,neuroendocrine tumour,EVEROLIMUS|LUTETIUM
|
||||
103,non-small cell lung cancer,ATEZOLIZMAB|DOCETAXEL|ERLOTINIB|PEMETREXED
|
||||
104,non-small-cell lung cancer,AFATINIB|ALECTINIB|AMIVANTAMAB|ATEZOLIZUMAB|BEVACIZUMAB|BRIGATINIB|CEMIPLIMAB|CERITINIB|CRIZOTINIB|DABRAFENIB|DACOMITINIB|DURVALUMAB|ENTRECTINIB|ERLOTINIB|GEFITINIB|LORLATINIB|MOBOCERTINIB|NECITUMUMAB|NIVOLUMAB|OSIMERTINIB|PACLITAXEL|PEMBROLIZUMAB|PEMETREXED|PRALSETINIB|RAMUCIRUMAB|SELPERCATINIB|SOTORASIB|TEPOTINIB
|
||||
105,obesity,LIRAGLUTIDE|NALTREXONE|ORLISTAT|SEMAGLUTIDE|SIBUTRAMINE
|
||||
106,oesophageal cancer,NIVOLUMAB
|
||||
107,osteoarthritis,CELECOXIB
|
||||
108,osteoporosis,ALENDRONATE|DENOSUMAB|ORAL|ROMOSOZUMAB
|
||||
109,osteosarcoma,MIFAMURTIDE
|
||||
110,ovarian cancer,BEVACIZUMAB|PACLITAXEL|PEGYLATED|TOPOTECAN|TRABECTEDIN
|
||||
111,overweight,RIMONABANT
|
||||
112,pancreatic cancer,GEMCITABINE|OLAPARIB|PACLITAXEL|PEGYLATED
|
||||
113,paroxysmal nocturnal haemoglobinuria,PEGCETACOPLAN|RAVULIZUMAB
|
||||
114,peripheral arterial disease,NAFTIDROFYRYL
|
||||
115,plaque psoriasis,ADALIMUMAB|APREMILAST|BIMEKIZUMAB|BRODALUMAB|CERTOLIZUMAB|GUSELKUMAB|INFLIXIMAB|IXEKIZUMAB|RISANKIZUMAB|SECUKINUMAB|TILDRAKIZUAMB|USTEKINUMAB
|
||||
116,polycystic kidney disease,TOLVAPTAN
|
||||
117,polycythaemia vera,RUXOLITINIB
|
||||
118,pregnancy,ROUTINE
|
||||
119,primary biliary cholangitis,OBETICHOLIC
|
||||
120,primary hypercholesterolaemia,ALIROCUMAB|EVOLOCUMAB
|
||||
121,prostate cancer,ABIRATERONE|APALUTAMIDE|CABAZITAXEL|DAROLUTAMIDE|DEGARELIX|DENOSUMAB|DOCETAXEL|ENZALUTAMIDE|OLAPARIB|PADELIPORFIN|RADIUM-|RADIUM|SIPULEUCEL-T
|
||||
122,psoriasis,EFALUZIMAB
|
||||
123,psoriatic arthritis,ABATACEPT|ADALIMUMAB|APREMILAST|CERTOLIZUMAB|ETANERCEPT|GOLIMUMAB|GUSELKUMAB|IXEKIZUMAB|RISANKIZUMAB|TOFACITINIB|UPADACITINIB|USTEKINUMAB
|
||||
124,pulmonary embolism,APIXABAN|DABIGATRAN|EDOXABAN|RIVAROXABAN
|
||||
125,pulmonary fibrosis,NINTEDANIB|PIRFENIDONE
|
||||
126,relapsing multiple sclerosis,OFATUMUMAB
|
||||
127,renal cell carcinoma,AVELUMAB|AXITINIB|BEVACIZUMAB|CABOZANTINIB|EVEROLIMUS|LENVATINIB|NIVOLUMAB|PAZOPANIB|PEMBROLIZUMAB|SUNITINIB|TIVOZANIB
|
||||
128,renal transplantation,BASILIXIMAB|INDUCTION
|
||||
129,retinal vein occlusion,AFLIBERCEPT|DEXAMETHASONE|RANIBIZUMAB
|
||||
130,rheumatoid arthritis,ABATACEPT|ADALIMUMAB|ANAKINRA|BARICITINIB|CELECOXIB|CERTOLIZUMAB|ETANERCEPT|FILGOTINIB|GOLIMUMAB|RITUXIMAB|SARILUMAB|TOCILIZUMAB|TOFACITINIB|UPADACITINIB
|
||||
131,rivaroxaban,ANDEXANET
|
||||
132,schizophrenia,AMISULPRIDE|ARIPIPRAZOLE|LOXAPINE
|
||||
133,seizures,CANNABIDIOL
|
||||
134,sepsis,DROTRECOGIN
|
||||
135,severe persistent allergic asthma,OMALIZUMAB
|
||||
136,short bowel syndrome,TEDUGLUTIDE
|
||||
137,sickle cell disease,CRIZANLIZUMAB
|
||||
138,sleep apnoea,PITOLISANT|SOLRIAMFETOL
|
||||
139,smoking cessation,NICOTINE|VARENICLINE
|
||||
140,soft tissue sarcoma,INTRAVENOUS|NBTXR-|OLARATUMAB
|
||||
141,spinal muscular atrophy,NUSINERSEN|RISDIPLAM
|
||||
142,squamous cell,CETUXIMAB
|
||||
143,squamous cell carcinoma,CEMIPLIMAB|NIVOLUMAB|PEMBROLIZUMAB
|
||||
144,stem cell transplant,MELPHALAN|TREOSULFAN
|
||||
145,stroke,APIXABAN|DABIGATRAN|EDOXABAN|RIVAROXABAN
|
||||
146,systemic lupus erythematosus,ANIFROLUMAB|ETANERCEPT
|
||||
147,systemic mastocytosis,MIDOSTAURIN
|
||||
148,thrombocytopenic purpura,ELTROMBOPAG|ROMIPLOSTIM
|
||||
149,thrombotic thrombocytopenic purpura,CAPLACIZUMAB
|
||||
150,thyroid cancer,CABOZANTINIB|LENVATINIB|SELPERCATINIB|VANDETANIB
|
||||
151,tophaceous gout,PEGLOTICASE
|
||||
152,transitional cell carcinoma,VINFLUNINE
|
||||
153,tuberous sclerosis,CANNABIDIOL
|
||||
154,type 1 diabetes,CONTINUOUS|DAPAGLIFLOZIN|INSULIN|SOTAGLIFLOZIN
|
||||
155,type 2 diabetes,CANAGLIFLOZIN|CONTINUOUS|DAPAGLIFLOZIN|EMPAGLIFLOZIN|ERTUGLIFLOZIN|EXENATIDE|FINERENONE|INSULIN|LIRAGLUTIDE|PIOGLITAZONE|ROSIGLITAZONE
|
||||
156,ulcerative colitis,ADALIMUMAB|INFLIXIMAB|FILGOTINIB|OZANIMOD|TOFACITINIB|UPADACITINIB|USTEKINUMAB|VEDOLIZUMAB
|
||||
157,urothelial carcinoma,ATEZOLIZUMAB|PEMBROLIZUMAB
|
||||
158,urticaria,OMALIZUMAB
|
||||
159,uterine fibroids,RELUGOLIX
|
||||
160,uveitis,ADALIMUMAB|FLUOCINOLONE
|
||||
161,vascular disease,MODIFIED-RELEASE|CLOPIDOGREL
|
||||
162,vasculitis,RITUXIMAB
|
||||
163,venous thromboembolism,APIXABAN|DABIGATRAN|RIVAROXABAN
|
||||
|
Reference in New Issue
Block a user