docs: update progress.txt with iteration 2 completion (Task 1.2 Pipeline)
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@@ -110,7 +110,7 @@ The `ids` column in ice_df contains hierarchical paths like:
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### Files changed:
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- `data_processing/pathway_pipeline.py` — new file (~380 lines)
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- `IMPLEMENTATION_PLAN.md` — marked Task 1.2 subtasks complete
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### Committed: 3c68478 "feat: add pathway pipeline module (Task 1.2)"
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### Committed: 5945649 "feat: add pathway pipeline module (Task 1.2)"
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### Patterns discovered:
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- The ids format uses " - " delimiter (space-hyphen-space), not "|" as noted in progress.txt — corrected in extract_denormalized_fields()
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- avg_days column from pathway_analyzer can be a timedelta — need to convert with .total_seconds() / 86400
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