diff --git a/progress.txt b/progress.txt index 9cb6999..153ac26 100644 --- a/progress.txt +++ b/progress.txt @@ -473,7 +473,7 @@ Use `rx.cond(condition, true_value, false_value)` not Python `if`. ### Files changed: - Modified: pathways_app/app_v2.py (+80 lines - load_data method, on_load handler, Path import) - Modified: IMPLEMENTATION_PLAN.md (marked 3.2 subtasks complete) -### Committed: [pending] +### Committed: f38ccfc "feat: implement data loading from SQLite (Task 3.2)" ### Patterns discovered: - Reflex on_load: Use `app.add_page(..., on_load=AppState.method_name)` to trigger method on page load - SQLite in Reflex state: Import sqlite3 inside method to avoid issues with state serialization @@ -491,3 +491,163 @@ Use `rx.cond(condition, true_value, false_value)` not Python `if`. - May need to store raw_data list in state or re-query SQLite based on filters ### Blocked items: - None + +## Iteration 9 - 2026-02-04 +### Task: 3.3 Filter Logic +### Why this task: +- Previous iteration (8) explicitly recommended continuing with Task 3.3 +- Filter logic is foundational for KPI calculations (Task 3.4) and chart generation (Phase 4) +- Natural progression through Phase 3: State Management +- Bridges data loading with reactive UI updates +### Status: COMPLETE +### What was done: +- Created `apply_filters()` method that queries SQLite with current filter state +- Implemented patient-level date filtering using CTE (Common Table Expression): + - "Initiated" filter: MIN(intervention_date) per patient within date range + - "Last Seen" filter: MAX(intervention_date) per patient within date range +- Implemented drug and directorate multi-select filters using SQL IN clauses +- Dynamic WHERE clause building based on which filters have selections +- Updated KPI values (unique_patients, total_drugs, total_cost) from filtered results +- Added apply_filters() calls to all filter event handlers: + - toggle_initiated_filter(), toggle_last_seen_filter() + - set_initiated_from/to(), set_last_seen_from/to() + - toggle_drug(), toggle_directorate() + - select_all_drugs(), clear_all_drugs() + - select_all_directorates(), clear_all_directorates() +- Called apply_filters() after initial data load in load_data() +- Note: Indication filter not implemented at DB level (indications are derived from drug mappings) +### Validation results: +- Tier 1 (Code): + - `python -m py_compile pathways_app/app_v2.py` PASSED + - `python -c "from pathways_app.app_v2 import app, AppState"` PASSED + - AppState.apply_filters exists and is callable +- Tier 2 (Visual): Deferred - requires running app with modified config +- Tier 3 (Functional): SQL query patterns tested directly against database: + - Total unique patients: 35,032 + - With Last Seen filter (last 6 months): 19,849 patients, 461 drugs, £211.5M + - ADALIMUMAB only: 2,839 patients, 1 drug, £14.4M + - RHEUMATOLOGY only: 3,540 patients, 104 drugs, £45.8M +### Files changed: +- Modified: pathways_app/app_v2.py (+167 lines - apply_filters method, event handler updates) +- Modified: IMPLEMENTATION_PLAN.md (marked 3.3 subtasks complete) +### Committed: cd15ab6 "feat: implement filter logic with reactive KPI updates (Task 3.3)" +### Patterns discovered: +- CTE pattern for patient-level aggregation: Use WITH clause to compute per-patient first/last dates, then JOIN back to get full records +- Dynamic SQL building: Build WHERE clauses incrementally, use HAVING for aggregated conditions +- COALESCE for null handling: `COALESCE(SUM(price_actual), 0)` prevents None when no records match +- Directory names in DB are UPPERCASE: "RHEUMATOLOGY" not "Rheumatology" +- SQLite IN clause with list: Use `",".join("?" * len(items))` for placeholder generation +### Next iteration should: +- Continue with Task 3.4: KPI Calculations +- The KPI calculations are already done inside apply_filters() - Task 3.4 may already be complete +- Review if any additional computed properties are needed: + - Currently: unique_patients, total_drugs, total_cost updated in apply_filters() + - indication_match_rate still shows "—" (match rate calculation not implemented) +- Consider implementing indication match rate calculation (requires Snowflake GP data lookup) +- OR if 3.4 is effectively complete, move to Phase 4: Interactive Chart (4.1 Chart Data Preparation) +### Blocked items: +- indication_match_rate calculation requires GP diagnosis data from Snowflake (not currently available in SQLite) +- Visual validation still blocked until rxconfig is updated to point to app_v2 + +## Iteration 10 - 2026-02-04 +### Task: 3.4 (review) + 4.1 Chart Data Preparation +### Why this task: +- Previous iteration (9) noted that Task 3.4 might already be complete since KPIs are computed in apply_filters() +- Reviewed Task 3.4: unique_patients, total_drugs, total_cost all implemented and reactive +- Only incomplete item (indication_match_rate) is blocked by Snowflake GP data +- Marked 3.4 complete and moved to Phase 4: Interactive Chart +- Task 4.1 is next logical step: prepare data for Plotly icicle chart +### Status: COMPLETE +### What was done: +- Reviewed Task 3.4: Confirmed KPI calculations already implemented in apply_filters() +- Marked Task 3.4 complete in IMPLEMENTATION_PLAN.md +- Implemented `prepare_chart_data()` method in AppState: + - Queries filtered data from SQLite + - Builds hierarchical structure: Root → Trust → Directory → Drug + - Calculates patient counts and costs at each level + - Computes colour values (proportions) for visualization + - Stores result in `chart_data` (list of dicts) for Reflex serialization +- Added `chart_data` and `chart_title` state variables +- Implemented `_generate_chart_title()` helper for dynamic titles +- Called `prepare_chart_data()` from `apply_filters()` for reactive updates +- Fixed SQL query to use correct column names (provider_code, org_name from fact_interventions) +### Validation results: +- Tier 1 (Code): + - `python -m py_compile pathways_app/app_v2.py` PASSED + - `python -c "from pathways_app.app_v2 import app, AppState"` PASSED + - Methods exist: prepare_chart_data, _generate_chart_title +- Tier 2 (Visual): Deferred - requires Plotly integration (Task 4.3) +- Tier 3 (Functional): SQL query tested directly - returns correct hierarchical data: + - Sample: "Norfolk and Norwich University | OPHTHALMOLOGY | RANIBIZUMAB | 1801 patients | £9.4M" +### Files changed: +- Modified: pathways_app/app_v2.py (+280 lines - prepare_chart_data, _generate_chart_title, chart_data/chart_title vars) +- Modified: IMPLEMENTATION_PLAN.md (marked 3.4 and 4.1 complete) +### Committed: 14f970d "feat: implement chart data preparation (Task 4.1)" +### Patterns discovered: +- fact_interventions already has org_name column - no need to join ref_organizations +- Column is provider_code not org_code in fact_interventions +- Chart data stored as list[dict[str, Any]] for Reflex serialization (DataFrames don't work) +- Color values computed as proportion of parent total (value/parent_total) +### Next iteration should: +- Continue with Task 4.2: Reactive Plotly Integration +- Create `generate_icicle_chart()` computed property that returns Plotly Figure +- Use chart_data from state to build go.Icicle() +- Configure chart colors using design system palette (may need to convert colour to proper colorscale) +- Set responsive sizing +- Reference visualization/plotly_generator.py for working go.Icicle() patterns +### Blocked items: +- indication_match_rate still blocked (Snowflake GP data) +- Visual validation blocked until Plotly integration complete + +## Iteration 11 - 2026-02-04 +### Task: 4.2 Reactive Plotly Integration +### Why this task: +- Previous iteration (10) explicitly recommended continuing with Task 4.2 +- Natural progression through Phase 4: Interactive Chart +- Chart data preparation (Task 4.1) is complete, now need figure generation +- Task 4.3 (Chart Component) depends on 4.2 being complete +### Status: COMPLETE +### What was done: +- Added `import plotly.graph_objects as go` to app_v2.py +- Created `icicle_figure` computed property (@rx.var) in AppState +- Implementation: + - Extracts lists from chart_data (parents, ids, labels, values, costs, colours) + - Uses NHS-inspired blue gradient colorscale: + - [0.0, "#003087"] Heritage Blue + - [0.25, "#0066CC"] Primary Blue + - [0.5, "#1E88E5"] Vibrant Blue + - [0.75, "#4FC3F7"] Sky Blue + - [1.0, "#E3F2FD"] Pale Blue + - Creates go.Icicle with customdata for hover (values, colours, costs) + - Text template shows label + patient count + - Hover template shows full details (patients, percentage of parent, cost) + - Layout configured with Inter font family, transparent background, 600px height + - Maintains hierarchy order with sort=False +- Returns empty go.Figure() when chart_data is empty +### Validation results: +- Tier 1 (Code): + - `python -m py_compile pathways_app/app_v2.py` PASSED + - `python -c "from pathways_app.app_v2 import app, AppState"` PASSED + - `hasattr(AppState, 'icicle_figure')` returns True + - Tested figure creation with sample data - creates valid go.Figure +- Tier 2 (Visual): Deferred to Task 4.3 — requires rx.plotly() integration +- Tier 3 (Functional): Figure generation tested with mock chart_data +### Files changed: +- Modified: pathways_app/app_v2.py (+111 lines - plotly import, icicle_figure computed property) +- Modified: IMPLEMENTATION_PLAN.md (marked 4.2 complete) +### Committed: ec8f8dc "feat: implement reactive Plotly icicle chart generation (Task 4.2)" +### Patterns discovered: +- @rx.var decorated properties can return Plotly Figure objects +- Custom colorscale: list of [position, color] pairs where position is 0.0-1.0 +- customdata=list(zip(...)) works for packaging multiple values for hover template +- Transparent background: paper_bgcolor="rgba(0,0,0,0)" and plot_bgcolor="rgba(0,0,0,0)" +### Next iteration should: +- Continue with Task 4.3: Chart Component +- Replace chart_ready_placeholder() with actual rx.plotly() component +- Pass AppState.icicle_figure to rx.plotly() +- Test with real data by running reflex (may need to update rxconfig or __init__.py) +- Handle edge cases: empty figure, loading state transitions +- Verify chart updates when filters change +### Blocked items: +- indication_match_rate still blocked (Snowflake GP data) +- Visual validation still needs running app (Task 4.3 will enable this)