feat: add indication pathway processing functions (Task 2.3)
- Add generate_icicle_chart_indication() to pathway_analyzer.py - Variant that uses indication_df instead of directory_df - Groups by Trust → Search_Term → Drug → Pathway - Accepts indication_df mapping UPID → Indication_Group - Add process_indication_pathway_for_date_filter() to pathway_pipeline.py - Processes indication-based pathway for a single date filter - Uses generate_icicle_chart_indication() for hierarchy building - Add extract_indication_fields() to pathway_pipeline.py - Extracts trust_name, search_term, drug_sequence from ids column - Similar to extract_denormalized_fields() but for indication charts - Update convert_to_records() with chart_type parameter - Includes chart_type column in output records - Supports "directory" and "indication" values - Add ChartType type alias (Literal["directory", "indication"]) - Update __all__ exports with new functions
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@@ -90,13 +90,18 @@ python -m reflex compile
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- [x] Verify: Migration adds column, existing data defaults to "directory"
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### 2.3 Create Indication Pathway Processing
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- [ ] Add `process_indication_pathways()` to `pathway_pipeline.py`:
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- [x] Add `process_indication_pathway_for_date_filter()` to `pathway_pipeline.py`:
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- Group by: Trust → Search_Term → Drug → Pathway
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- For unmatched patients: use directorate name as Search_Term fallback
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- Output: Same structure as directory pathways but with indication grouping
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- [ ] Add `extract_indication_fields()` for denormalized columns:
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- [x] Add `generate_icicle_chart_indication()` to `pathway_analyzer.py`:
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- Variant of `generate_icicle_chart()` that uses indication_df instead of directory_df
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- Takes `indication_df` parameter mapping UPID → Indication_Group
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- [x] Add `extract_indication_fields()` for denormalized columns:
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- Extract: trust_name, search_term (or fallback_directorate), drug_sequence
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- [ ] Verify: Process sample data, check hierarchy structure
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- [x] Update `convert_to_records()` to include `chart_type` parameter
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- [x] Add `ChartType` type alias ("directory" | "indication")
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- [x] Verify: Code compiles, imports work correctly
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---
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