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docs: update all documentation for Dash migration (Phase 6)

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Rewrote README.md, USER_GUIDE.md, and DEPLOYMENT.md to reflect
the Dash application. Updated RALPH_PROMPT.md, guardrails.md, and
DESIGN_SYSTEM.md to remove Reflex references. All non-archive
documentation now reflects the current Dash + DMC architecture.
This commit is contained in:
Andrew Charlwood
2026-02-06 14:54:12 +00:00
parent 4cb5641c2d
commit 54b4a0f743
8 changed files with 635 additions and 956 deletions
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@@ -885,11 +885,46 @@ Migrating the HCD Analysis frontend from Reflex to Dash (Plotly) + Dash Mantine
### Blocked items (iter 16):
- None
## MIGRATION COMPLETE
All 20 tasks across 5 phases complete. 16 iterations total.
## Iteration 17 — 2026-02-06
### Task: Phase 6 — Update all documentation
### Why this task:
- Phases 0-5 complete. Phase 6 (documentation cleanup) was the only remaining work.
- All non-archive .md files still referenced Reflex (commands, architecture, deployment).
### Status: COMPLETE
### What was done:
- **README.md**: Complete rewrite — replaced `reflex run` with `python run_dash.py`, updated features list (dual charts, pre-computed pathways, drug browser), updated project structure (dash_app/ instead of pathways_app/), updated quick start, usage, troubleshooting
- **docs/USER_GUIDE.md**: Complete rewrite — new single-page Dash UI guide covering header, sidebar, KPI row, filter bar, chart card, drawer, drug browser, indication matching
- **docs/DEPLOYMENT.md**: Complete rewrite — Dash/Gunicorn deployment replacing Reflex/FastAPI/Next.js, Docker examples, nginx config, systemd service, single port 8050
- **docs/DESIGN_SYSTEM.md**: Updated "Reflex Implementation" section → "Dash Implementation" with correct CSS/component references
- **RALPH_PROMPT.md**: Updated title ("Dash Application Maintenance" not "Reflex → Dash Migration"), updated data reference section to point to src/ shared functions instead of pathways_app/
- **guardrails.md**: Updated 3 rules to reflect current Dash architecture (shared utilities exist, icicle function exists, data queries exist) instead of migration instructions
- **IMPLEMENTATION_PLAN.md**: Phase 6 tasks marked [x]
### Validation results:
- Tier 1 (Code): `from dash_app.app import app` — OK, 7 callbacks registered
- Grep for Reflex in non-archive .md files: only CLAUDE.md line 140 (archive description — accurate) and IMPLEMENTATION_PLAN.md (historical migration log — accurate)
### Files changed:
- README.md — Rewritten for Dash
- docs/USER_GUIDE.md — Rewritten for Dash
- docs/DEPLOYMENT.md — Rewritten for Dash
- docs/DESIGN_SYSTEM.md — Updated implementation section
- RALPH_PROMPT.md — Updated title and references
- guardrails.md — Updated 3 rules
- IMPLEMENTATION_PLAN.md — Phase 6 marked [x]
- progress.txt — This entry
### Patterns discovered:
- archive/ files (IMPROVEMENT_RECOMMENDATIONS.md) retain Reflex references intentionally — they're historical
- IMPLEMENTATION_PLAN.md retains Reflex references in completed task descriptions — these are accurate migration history
### Next iteration should:
- Phase 6 is complete. All tasks across all phases are now [x].
### Blocked items:
- None
## ALL PHASES COMPLETE
All 24 tasks across 6 phases complete. 17 iterations total.
- Phase 0: Scaffolding (2 tasks) — iteration 1
- Phase 1: Data Access (2 tasks) — iterations 2-3
- Phase 2: Static Layout (3 tasks) — iterations 4-6
- Phase 3: Core Callbacks (4 tasks) — iterations 7-10
- Phase 4: Drawer (2 tasks) — iterations 11-12
- Phase 5: Polish & Cleanup (4 tasks) — iterations 13-16
- Phase 6: Documentation (4 tasks) — iteration 17