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feat: add chart_type column to pathway_nodes schema (Task 2.2)

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- Add chart_type column (TEXT NOT NULL DEFAULT 'directory')
- Update UNIQUE constraint to (date_filter_id, chart_type, ids)
- Add idx_pathway_nodes_chart_type index for filtering
- Add migrate_pathway_nodes_chart_type() function for existing databases
- Update initialize_database() to run migration automatically
- Existing rows default to 'directory' chart type
This commit is contained in:
Andrew Charlwood
2026-02-05 14:24:57 +00:00
parent 3db93a685b
commit 19607d72b0
3 changed files with 112 additions and 9 deletions
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IMPLEMENTATION_PLAN.md
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@@ -80,11 +80,14 @@ python -m reflex compile
- [x] Verify: Test with sample patient data
### 2.2 Add Chart Type Support to Schema
- [ ] Add `chart_type` column to `pathway_nodes` table:
- [x] Add `chart_type` column to `pathway_nodes` table:
- Values: "directory" (existing), "indication" (new)
- Update schema in `data_processing/schema.py`
- [ ] Update `pathway_date_filters` or create `pathway_chart_types` reference table
- [ ] Verify: Migration adds column, existing data defaults to "directory"
- [x] Update UNIQUE constraint to include chart_type: `UNIQUE(date_filter_id, chart_type, ids)`
- [x] Add `idx_pathway_nodes_chart_type` index for filtering by chart type
- [x] Add `migrate_pathway_nodes_chart_type()` function for existing databases
- [x] Update `initialize_database()` to run migration automatically
- [x] Verify: Migration adds column, existing data defaults to "directory"
### 2.3 Create Indication Pathway Processing
- [ ] Add `process_indication_pathways()` to `pathway_pipeline.py`: